Typhoon Faxai has forced more than 200 flights to be cancelled on Sunday and Monday.
Japan Airlines has cancelled 96 domestic and two international flights mainly to and from Tokyo's Haneda Airport.
All Nippon Airways has cancelled 22 flights.
The number of canceled flights by other carriers include: AIRDO 17; Skymark Airlines 18; Star Flyer 14; Peach Aviation 10; Solaseed Air 15; Spring Airlines Japan 4; Japan Transocean Air 5; Fuji Dream Airlines 5.
Carriers are urging passengers to check their websites to stay updated with the latest information.