Weather officials are forecasting localized torrential rainfall in western and eastern Japan through early Friday, and are warning of mudslides and flooding.
The Meteorological Agency says a front stretching along the Honshu region and warm humid air are making atmospheric conditions unstable over a wide area of western and eastern Japan.
Japan's Environment Ministry says waste produced by decontamination work following the 2011 Fukushima Daiichi nuclear plant accident could leak at 12 locations in case of torrential rain.
The ministry checked all the sites where the waste is kept after 91 bags were swept into rivers in Fukushima and Tochigi prefectures last year due to downpours caused by Typhoon Hagibis.